Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs3830227 chr10:1132749 GTAGT/G 1.75E-5 132 46.3 37.1 33.52 KM Plot
TGCT rs3834245 chr5:1810191 C/CT 5.72E-6 133 42.27 43.9 24.73 KM Plot
TGCT rs3835138 chr12:129278281 TA/TAA 1.8E-5 133 41.33 42.27 29.53 KM Plot
TGCT rs3837141 chr7:127664117 CTG/CTGTG 6.48E-5 132 46.53 37.1 9.77 KM Plot
TGCT rs3840940 chr19:37903316 A/AT 1.77E-13 133 45.1 37.53 17.1 KM Plot
TGCT rs385122 chr17:39341294 T/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs385380 chr17:39367672 C/T 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs388650 chr17:39341646 C/T 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs398825 chr17:39340707 C/T 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs404052 chr17:39340262 T/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs4052459 chr13:78235993 A/G 1.1E-5 132 15.7 35.37 42.18 KM Plot
TGCT rs405495 chr17:39339089 T/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs4070 chr4:47438731 C/A 0.000153 131 46.3 36.1 51.6 KM Plot
TGCT rs407264 chr17:39339991 C/T 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs4084708 chr3:172441246 G/A 1.49E-5 134 24.15 37.3 45.1 KM Plot